xcrysden on Ventura

[David Strubbe]

Hello Jianxin,

Did you try running the testsuite (port test xcrysden) or trying some other
examples?

David

On Sat, Mar 11, 2023 at 4:14 PM Zhu, Jianxin via macports-users <
macports-users at lists.macports.org> wrote:

> Hello,
>
>
>
> I recently upgraded my Macbook computer (intel processor) OS to Ventura
> and reinstalled MacPorts.
>
> After I port installed xcrysden (1.6.2), I try to visualize a Wien2k
> struct file.
>
> But the program is stuck at the following and no image comes up.
>
> Any help is appreciated.
>
>
>
> Thanks,
>
>
>
> Jianxin
>
>
>
> +-----------------------------------------------------------------+
>
> |*****************************************************************|
>
> |*                                                               *|
>
> |*  XCrySDen -- (X-Window) CRYstalline Structures and DENsities  *|
>
> |*               =         ===         =              ===        *|
>
> |*---------------------------------------------------------------*|
>
> |*                                                               *|
>
> |*    Anton Kokalj (tone.kokalj at ijs.si)                          *|
>
> |*    Jozef Stefan Institute, Ljubljana, Slovenia                *|
>
> |*                                                               *|
>
> |*    Copyright (c) 1996--2019 by Anton Kokalj                   *|
>
> |*                                                               *|
>
> |*****************************************************************|
>
> +-----------------------------------------------------------------+
>
>
>
>   Version: 1.6.2
>
>
>
>   Please report bugs to: tone.kokalj at ijs.si
>
>
>
>
>
>   TERMS OF USE:
>
>   -------------
>
>   XCRYSDEN is released under the GNU General Public License.
>
>
>
>   Whenever graphics generated by XCRYSDEN are used in scientific
>
>   publications, it shall be greatly appreciated to include an explicit
>
>   reference. The preferred form is the following:
>
>
>
>   [ref] A. Kokalj, J. Mol. Graph. Model., Vol. 17, pp. 176-179, 1999.
>
>         Code available from http://www.xcrysden.org/.
>
>
>
>
>
> XCRYSDEN_TOPDIR=/opt/local/share/xcrysden-1.6.2
>
> XCRYSDEN_SCRATCH=/var/folders/d6/987tghwd307_6djp3bhs765c0000gp/T/
>
>
>
> Running on platform : unix
>
>    Operating system : Darwin
>
> Package ImageMagick's convert: /opt/local/bin/convert
>
> Package ImageMagick's import: /opt/local/bin/import
>
> Package Gifsicle: /opt/local/bin/gifsicle
>
> Package Whirlgif: /opt/local/bin/whirlgif
>
> Package Mencoder: /opt/local/bin/mencoder
>
> Package Ppmtompeg: /opt/local/bin/ppmtompeg
>
> Package Xwd: /opt/X11/bin/xwd
>
> Executing: /opt/local/lib/xcrysden-1.6.2/ftnunit
>
> Viewer: mesaWid = .mesa
>
> Executing: /opt/local/lib/xcrysden-1.6.2/str2xcr TiC
>
> SetWatchCursor: .menu
>
> SetWatchCursor: .mesa
>
> SetWatchCursor: .ctrl
>
> SetWatchCursor: .mea
>
> SetWatchCursor: .close
>
> SetWatchCursor: .#BWidget
>
> SetWatchCursor: .__tk_filedialog
>
> Executing: /opt/local/lib/xcrysden-1.6.2/gengeom 0 1 21 1 1 1 1
> /var/folders/d6/987tghwd307_6djp3bhs765c0000gp/T//xc_95436/xc_gengeom.95436
> /var/folders/d6/987tghwd307_6djp3bhs765c0000gp/T//xc_95436/xc_str2xcr.95436
>
> SetWatchCursor: .menu
>
> SetWatchCursor: .mesa
>
> SetWatchCursor: .ctrl
>
> SetWatchCursor: .mea
>
> SetWatchCursor: .close
>
> SetWatchCursor: .#BWidget
>
> SetWatchCursor: .__tk_filedialog
>
> Executing: /opt/local/lib/xcrysden-1.6.2/gengeom 2 1 21 5 1 1 1
> /var/folders/d6/987tghwd307_6djp3bhs765c0000gp/T//xc_95436/xc_struc.95436
> /var/folders/d6/987tghwd307_6djp3bhs765c0000gp/T//xc_95436/xc_str2xcr.95436
>
> SetWatchCursor: .menu
>
> SetWatchCursor: .mesa
>
> SetWatchCursor: .ctrl
>
> SetWatchCursor: .mea
>
> SetWatchCursor: .close
>
> SetWatchCursor: .#BWidget
>
> SetWatchCursor: .__tk_filedialog
>
> reading PRIMCOORD
>
> reading CONVCOORD
>
> Number of Atoms:  27
>
> Number of Frames: 12
>
> natoms: 27 , ndel: 0
>
> Filtered number of atoms: 27
>
> Estimated number of bonds = 108
>
> sInfo(dim) = 3; periodic(dim) = 3
>
>
>
>
>
>
>
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